I found this article on Job-Hunt.org: How to Organize and Track Your Job Search. There is a link to another article about following-up in a job search.
I like everything Hannah is saying in her articles. End your frustration, and impress recruiters by not sounding lost or uninterested, by staying on top of this.
Hannah suggests some systems, I used an Excel spreadsheet, but I don’t think there is anything better than JibberJobber.
Read her articles and just about everything she talks about can be done within JibberJobber… even the free level!